From 3c24954dd2244a6211cf0fed74603a318a8b7361 Mon Sep 17 00:00:00 2001 From: "Sean P. Goggins" Date: Wed, 29 Nov 2023 12:05:18 -0600 Subject: [PATCH 1/7] tensorflow update --- augur/tasks/data_analysis/message_insights/setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/augur/tasks/data_analysis/message_insights/setup.py b/augur/tasks/data_analysis/message_insights/setup.py index 7609ead3c3..04c2822d35 100644 --- a/augur/tasks/data_analysis/message_insights/setup.py +++ b/augur/tasks/data_analysis/message_insights/setup.py @@ -38,7 +38,7 @@ def read(filename): 'emoji==1.2.0', 'Keras==2.13.1', 'Keras-Preprocessing', - 'tensorflow==2.13.1', + 'tensorflow==2.15.0', 'h5py==3.10.0', 'scikit-image==0.19.1', 'joblib==1.2.0', From 59486fec91ed5ae11c98bc6e665e9976ba4b12c9 Mon Sep 17 00:00:00 2001 From: "Sean P. Goggins" Date: Wed, 29 Nov 2023 12:11:05 -0600 Subject: [PATCH 2/7] scipy numpy updates --- augur/tasks/data_analysis/clustering_worker/setup.py | 2 +- augur/tasks/data_analysis/discourse_analysis/setup.py | 2 +- augur/tasks/data_analysis/insight_worker/setup.py | 4 ++-- augur/tasks/data_analysis/message_insights/setup.py | 4 ++-- .../tasks/data_analysis/pull_request_analysis_worker/setup.py | 4 ++-- setup.py | 4 ++-- 6 files changed, 10 insertions(+), 10 deletions(-) diff --git a/augur/tasks/data_analysis/clustering_worker/setup.py b/augur/tasks/data_analysis/clustering_worker/setup.py index 56e01e52f3..778d1f580b 100644 --- a/augur/tasks/data_analysis/clustering_worker/setup.py +++ b/augur/tasks/data_analysis/clustering_worker/setup.py @@ -29,7 +29,7 @@ def read(filename): 'psycopg2-binary==2.9.3', #'sklearn==0.0.0', 'scikit-learn==1.1.3', - 'numpy==1.22.0', + 'numpy==1.27.0', 'nltk==3.6.6', 'seaborn==0.11.1', 'pandas==1.5.3', diff --git a/augur/tasks/data_analysis/discourse_analysis/setup.py b/augur/tasks/data_analysis/discourse_analysis/setup.py index 6e992eb857..118c5bdf50 100644 --- a/augur/tasks/data_analysis/discourse_analysis/setup.py +++ b/augur/tasks/data_analysis/discourse_analysis/setup.py @@ -28,7 +28,7 @@ def read(filename): 'requests==2.28.0', 'psycopg2-binary==2.9.3', 'click==8.0.3', - 'scipy==1.10.0', + 'scipy>=1.10.0', 'nltk==3.6.6', 'pandas==1.5.3', 'scikit-learn==1.1.3', diff --git a/augur/tasks/data_analysis/insight_worker/setup.py b/augur/tasks/data_analysis/insight_worker/setup.py index 0eb35d8a78..74d02850f6 100644 --- a/augur/tasks/data_analysis/insight_worker/setup.py +++ b/augur/tasks/data_analysis/insight_worker/setup.py @@ -29,9 +29,9 @@ def read(filename): 'requests==2.28.0', 'psycopg2-binary==2.9.3', 'click==8.0.3', - 'scipy>=1.7.3', + 'scipy>=1.10.0', 'sklearn==0.0', - 'numpy==1.22.0', + 'numpy==1.27.0', ], entry_points={ 'console_scripts': [ diff --git a/augur/tasks/data_analysis/message_insights/setup.py b/augur/tasks/data_analysis/message_insights/setup.py index 04c2822d35..373e4fd203 100644 --- a/augur/tasks/data_analysis/message_insights/setup.py +++ b/augur/tasks/data_analysis/message_insights/setup.py @@ -30,9 +30,9 @@ def read(filename): 'requests==2.28.0', 'psycopg2-binary==2.9.3', 'click==8.0.3', - 'scipy==1.10.0', + 'scipy>=1.10.0', 'scikit-learn==1.1.3', #0.24.2', - 'numpy==1.22.0', + 'numpy==1.27.0', 'nltk==3.6.6', 'pandas==1.5.3', 'emoji==1.2.0', diff --git a/augur/tasks/data_analysis/pull_request_analysis_worker/setup.py b/augur/tasks/data_analysis/pull_request_analysis_worker/setup.py index e6a8927998..738b3ae3a1 100644 --- a/augur/tasks/data_analysis/pull_request_analysis_worker/setup.py +++ b/augur/tasks/data_analysis/pull_request_analysis_worker/setup.py @@ -29,12 +29,12 @@ def read(filename): 'psycopg2-binary==2.9.3', 'sklearn==0.0', 'nltk==3.6.6', - 'numpy==1.22.0', + 'numpy==1.27.0', 'pandas==1.5.3', 'emoji==1.2.0', 'joblib==1.2.0', 'xgboost==1.4.2', - 'scipy==1.10.0' + 'scipy>=1.10.0' ], classifiers=[ 'Development Status :: 2 - Pre-Alpha', diff --git a/setup.py b/setup.py index bc229654c0..634e46ee88 100644 --- a/setup.py +++ b/setup.py @@ -49,7 +49,7 @@ "Flask-Login==0.5.0", "Flask-WTF==1.0.0", "pandas==1.5.3", # 1.4.3 - "numpy==1.22", # 1.23.2 + "numpy==1.27.0", # 1.23.2 "requests==2.28.0", # 2.28.1 "psycopg2-binary==2.9.3", #2.9.3 what is pscopg-binary 3.0.16 "click==8.0.3", # 8.1.3 @@ -66,7 +66,7 @@ "distributed >= 2021.03.0", # 2022.8.1 "nltk==3.6.6", # 3.7 "h5py==3.10.0", # 3.7 - "scipy==1.10.0", # 1.9.0 + "scipy>=1.10.0", # 1.9.0 "blinker==1.4", # 1.5 "protobuf<3.22", # 4.21.5 "slack==0.0.2", # 0.0.2 From 82c1a1b4285a99d5cab8397991450e40d28dde60 Mon Sep 17 00:00:00 2001 From: "Sean P. Goggins" Date: Wed, 29 Nov 2023 12:13:09 -0600 Subject: [PATCH 3/7] numpy --- augur/tasks/data_analysis/clustering_worker/setup.py | 2 +- augur/tasks/data_analysis/insight_worker/setup.py | 2 +- augur/tasks/data_analysis/message_insights/setup.py | 2 +- augur/tasks/data_analysis/pull_request_analysis_worker/setup.py | 2 +- setup.py | 2 +- 5 files changed, 5 insertions(+), 5 deletions(-) diff --git a/augur/tasks/data_analysis/clustering_worker/setup.py b/augur/tasks/data_analysis/clustering_worker/setup.py index 778d1f580b..06d2a5eeba 100644 --- a/augur/tasks/data_analysis/clustering_worker/setup.py +++ b/augur/tasks/data_analysis/clustering_worker/setup.py @@ -29,7 +29,7 @@ def read(filename): 'psycopg2-binary==2.9.3', #'sklearn==0.0.0', 'scikit-learn==1.1.3', - 'numpy==1.27.0', + 'numpy==1.26.0', 'nltk==3.6.6', 'seaborn==0.11.1', 'pandas==1.5.3', diff --git a/augur/tasks/data_analysis/insight_worker/setup.py b/augur/tasks/data_analysis/insight_worker/setup.py index 74d02850f6..1ee6e8a4bd 100644 --- a/augur/tasks/data_analysis/insight_worker/setup.py +++ b/augur/tasks/data_analysis/insight_worker/setup.py @@ -31,7 +31,7 @@ def read(filename): 'click==8.0.3', 'scipy>=1.10.0', 'sklearn==0.0', - 'numpy==1.27.0', + 'numpy==1.26.0', ], entry_points={ 'console_scripts': [ diff --git a/augur/tasks/data_analysis/message_insights/setup.py b/augur/tasks/data_analysis/message_insights/setup.py index 373e4fd203..ae3bdf254e 100644 --- a/augur/tasks/data_analysis/message_insights/setup.py +++ b/augur/tasks/data_analysis/message_insights/setup.py @@ -32,7 +32,7 @@ def read(filename): 'click==8.0.3', 'scipy>=1.10.0', 'scikit-learn==1.1.3', #0.24.2', - 'numpy==1.27.0', + 'numpy==1.26.0', 'nltk==3.6.6', 'pandas==1.5.3', 'emoji==1.2.0', diff --git a/augur/tasks/data_analysis/pull_request_analysis_worker/setup.py b/augur/tasks/data_analysis/pull_request_analysis_worker/setup.py index 738b3ae3a1..3341f24ff1 100644 --- a/augur/tasks/data_analysis/pull_request_analysis_worker/setup.py +++ b/augur/tasks/data_analysis/pull_request_analysis_worker/setup.py @@ -29,7 +29,7 @@ def read(filename): 'psycopg2-binary==2.9.3', 'sklearn==0.0', 'nltk==3.6.6', - 'numpy==1.27.0', + 'numpy==1.26.0', 'pandas==1.5.3', 'emoji==1.2.0', 'joblib==1.2.0', diff --git a/setup.py b/setup.py index 634e46ee88..d2a149d93b 100644 --- a/setup.py +++ b/setup.py @@ -49,7 +49,7 @@ "Flask-Login==0.5.0", "Flask-WTF==1.0.0", "pandas==1.5.3", # 1.4.3 - "numpy==1.27.0", # 1.23.2 + "numpy==1.26.0", # 1.23.2 "requests==2.28.0", # 2.28.1 "psycopg2-binary==2.9.3", #2.9.3 what is pscopg-binary 3.0.16 "click==8.0.3", # 8.1.3 From 8d4c1d79d49d784009fe6565611934461331af30 Mon Sep 17 00:00:00 2001 From: "Sean P. Goggins" Date: Wed, 29 Nov 2023 12:14:43 -0600 Subject: [PATCH 4/7] keras --- augur/tasks/data_analysis/message_insights/setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/augur/tasks/data_analysis/message_insights/setup.py b/augur/tasks/data_analysis/message_insights/setup.py index ae3bdf254e..8f529ec536 100644 --- a/augur/tasks/data_analysis/message_insights/setup.py +++ b/augur/tasks/data_analysis/message_insights/setup.py @@ -36,7 +36,7 @@ def read(filename): 'nltk==3.6.6', 'pandas==1.5.3', 'emoji==1.2.0', - 'Keras==2.13.1', + 'keras>=2.15.0', 'Keras-Preprocessing', 'tensorflow==2.15.0', 'h5py==3.10.0', From d204673650dae6e5b2e43c77f8ec2abe62f8e001 Mon Sep 17 00:00:00 2001 From: "Sean P. Goggins" Date: Thu, 30 Nov 2023 07:46:03 -0600 Subject: [PATCH 5/7] allowing matplotlib to go higher if compatible. --- augur/tasks/data_analysis/clustering_worker/setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/augur/tasks/data_analysis/clustering_worker/setup.py b/augur/tasks/data_analysis/clustering_worker/setup.py index 06d2a5eeba..78fb0b4b50 100644 --- a/augur/tasks/data_analysis/clustering_worker/setup.py +++ b/augur/tasks/data_analysis/clustering_worker/setup.py @@ -33,7 +33,7 @@ def read(filename): 'nltk==3.6.6', 'seaborn==0.11.1', 'pandas==1.5.3', - 'matplotlib==3.5.1' + 'matplotlib>=3.5.1' ], classifiers=[ 'Development Status :: 2 - Pre-Alpha', From e4d1375165aaa28a028cbbb9a86a1b309d02bd0c Mon Sep 17 00:00:00 2001 From: "Sean P. Goggins" Date: Thu, 30 Nov 2023 07:49:59 -0600 Subject: [PATCH 6/7] Finished compatibility updates for compilation on osx with python 3.11 --- augur/tasks/data_analysis/discourse_analysis/setup.py | 4 ++-- augur/tasks/data_analysis/message_insights/setup.py | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/augur/tasks/data_analysis/discourse_analysis/setup.py b/augur/tasks/data_analysis/discourse_analysis/setup.py index 118c5bdf50..37d6557ec5 100644 --- a/augur/tasks/data_analysis/discourse_analysis/setup.py +++ b/augur/tasks/data_analysis/discourse_analysis/setup.py @@ -33,8 +33,8 @@ def read(filename): 'pandas==1.5.3', 'scikit-learn==1.1.3', 'textblob==0.15.3', - 'python-crfsuite==0.9.8', - 'sklearn-crfsuite==0.3.6', + 'python-crfsuite>=0.9.8', + 'sklearn-crfsuite>=0.3.6', 'tabulate==0.8.9' ], # python-crfsuite-0.9.8 sklearn-crfsuite-0.3.6 tabulate-0.8.9 entry_points={ diff --git a/augur/tasks/data_analysis/message_insights/setup.py b/augur/tasks/data_analysis/message_insights/setup.py index 8f529ec536..a4f6a30c43 100644 --- a/augur/tasks/data_analysis/message_insights/setup.py +++ b/augur/tasks/data_analysis/message_insights/setup.py @@ -45,7 +45,7 @@ def read(filename): 'xgboost', 'bs4==0.0.1', 'xlrd==2.0.1', - 'gensim==4.2.0' + 'gensim>=4.2.0' ], classifiers=[ 'Development Status :: 3 - Alpha', From 574885ef7762b0c726edff1e3048971f1da00fff Mon Sep 17 00:00:00 2001 From: "Sean P. Goggins" Date: Thu, 30 Nov 2023 18:56:50 +0000 Subject: [PATCH 7/7] version bump Signed-off-by: Sean P. Goggins --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 075a397fc5..556f8c3611 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,4 @@ -# Augur NEW Release v0.60.2 +# Augur NEW Release v0.60.5 [![first-timers-only](https://img.shields.io/badge/first--timers--only-friendly-blue.svg?style=flat-square)](https://www.firsttimersonly.com/) We follow the [First Timers Only](https://www.firsttimersonly.com/) philosophy of tagging issues for first timers only, and walking one newcomer through the resolution process weekly. [You can find these issues tagged with "first timers only" on our issues list.](https://github.com/chaoss/augur/labels/first-timers-only). @@ -7,7 +7,7 @@ ## NEW RELEASE ALERT! ### [If you want to jump right in, updated docker build/compose and bare metal installation instructions are available here](docs/new-install.md) -Augur is now releasing a dramatically improved new version to the main branch. It is also available here: https://github.com/chaoss/augur/releases/tag/v0.60.2 +Augur is now releasing a dramatically improved new version to the main branch. It is also available here: https://github.com/chaoss/augur/releases/tag/v0.60.5 - The `main` branch is a stable version of our new architecture, which features: - Dramatic improvement in the speed of large scale data collection (100,000+ repos). All data is obtained for 100k+ repos within 2 weeks. - A new job management architecture that uses Celery and Redis to manage queues, and enables users to run a Flower job monitoring dashboard