gitlab-ci.yml

# This is how the gitlab cicd yml would look, equivalent to the github actions
variables:
  RENV_PATHS_CACHE: ${CI_PROJECT_DIR}/cache
  RENV_PATHS_LIBRARY: ${CI_PROJECT_DIR}/renv/library

cache:
  key: ${CI_JOB_NAME}
  paths:
    - ${RENV_PATHS_CACHE}
    - ${RENV_PATHS_LIBRARY}

before_script:
  - apt-get update && apt-get update -y && apt-get install -y git
  - Rscript -e "if (!requireNamespace('renv', quietly = TRUE)) install.packages('renv')"
  - Rscript -e "renv::restore()"

run:
  image: rocker/r-ver:4.4.0
  script:
      - Rscript run.R
      - git config user.email "ci-bot@email.com"
      - git config user.name "ci-bot"
      - git remote add gitlab_origin https://avixrunner:$PAT@gitlab.com/bizscisolve/avix.git
      - git add .
      - git commit -m "push back from pipeline"
      - git push gitlab_origin HEAD:master -o ci.skip # prevent triggering pipeline again