From 4354d88d39bc5f092176bc2c6ec9d6e383196dea Mon Sep 17 00:00:00 2001 From: "David H. Hagan" Date: Wed, 8 May 2024 16:31:21 -0400 Subject: [PATCH 01/14] Widened deps --- .github/workflows/test-and-report.yml | 2 +- poetry.lock | 140 +++++++++++++++++--------- pyproject.toml | 10 +- 3 files changed, 100 insertions(+), 52 deletions(-) diff --git a/.github/workflows/test-and-report.yml b/.github/workflows/test-and-report.yml index 384a6d2..1d26a56 100644 --- a/.github/workflows/test-and-report.yml +++ b/.github/workflows/test-and-report.yml @@ -5,7 +5,7 @@ jobs: runs-on: ubuntu-latest strategy: matrix: - python: ["3.8", "3.9", "3.10", "3.11"] + python: ["3.8", "3.9", "3.10", "3.11", "3.12"] name: Python ${{ matrix.python }} steps: - name: Checkout branch diff --git a/poetry.lock b/poetry.lock index 1d4bd22..d2965aa 100644 --- a/poetry.lock +++ b/poetry.lock @@ -149,7 +149,7 @@ css = ["tinycss2 (>=1.1.0,<1.3)"] name = "certifi" version = "2024.2.2" description = "Python package for providing Mozilla's CA Bundle." -category = "dev" +category = "main" optional = false python-versions = ">=3.6" files = [ @@ -226,7 +226,7 @@ pycparser = "*" name = "charset-normalizer" version = "3.3.2" description = "The Real First Universal Charset Detector. 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["asv", "gmpy2", "mpmath", "pooch", "pytest", "pytest-cov", "pytest-timeout", "pytest-xdist", "scikit-umfpack", "threadpoolctl"] +dev = ["flake8", "mypy", "pycodestyle", "typing_extensions"] +doc = ["matplotlib (>2)", "numpydoc", "pydata-sphinx-theme (==0.9.0)", "sphinx (!=4.1.0)", "sphinx-panels (>=0.5.2)", "sphinx-tabs"] +test = ["asv", "gmpy2", "mpmath", "pytest", "pytest-cov", "pytest-xdist", "scikit-umfpack", "threadpoolctl"] [[package]] name = "seaborn" @@ -2855,7 +2903,7 @@ files = [ name = "urllib3" version = "2.2.1" description = "HTTP library with thread-safe connection pooling, file post, and more." -category = "dev" +category = "main" optional = false python-versions = ">=3.8" files = [ @@ -2911,5 +2959,5 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p [metadata] lock-version = "2.0" -python-versions = ">=3.8, <3.12" -content-hash = "311c018d361ccc42480a23b6cbb7a493b715c63919c2eb9cfe759e58afcca58c" +python-versions = ">=3.8, <4.0" +content-hash = "1e18d52f12c9ef60a42db2ec343bf38f8140e093db7b87c5df6741414fe3ddc9" diff --git a/pyproject.toml b/pyproject.toml index 58eab89..af90888 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "py-smps" -version = "2.1.0a5" +version = "2.1.0a6" description = "A simple python library to import and visualize data from particle sizing instruments" authors = ["David H Hagan "] license = "MIT" @@ -13,16 +13,16 @@ packages = [ ] [tool.poetry.dependencies] -python = ">=3.8, <3.12" +python = ">=3.8, <4.0" pandas = ">=1.2" scipy = ">1.7" setuptools = ">48.0" joblib = "^1.3" seaborn = ">=0.12" -matplotlib = ">=3.4,<3.6.1 || >3.6.1" -numpy = ">1.20,<1.24.0 || >1.24.0" +matplotlib = ">=3.4,!=3.6.1" +numpy = ">1.20,!=1.24.0" statsmodels = ">=0.12.0" -lock = "^2018.3.25.2110" +requests = ">=2.0" [tool.poetry.group.dev.dependencies] pytest = "^6.0" From f0034b7461c86c3db6ad7dad193505fa28da480f Mon Sep 17 00:00:00 2001 From: "David H. Hagan" Date: Wed, 8 May 2024 16:33:23 -0400 Subject: [PATCH 02/14] Upped statsmodels dep --- poetry.lock | 2 +- pyproject.toml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/poetry.lock b/poetry.lock index d2965aa..280d825 100644 --- a/poetry.lock +++ b/poetry.lock @@ -2960,4 +2960,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p [metadata] lock-version = "2.0" python-versions = ">=3.8, <4.0" -content-hash = "1e18d52f12c9ef60a42db2ec343bf38f8140e093db7b87c5df6741414fe3ddc9" +content-hash = "c360d0acb3d18be74e10e7f33b0a4b5adcf183b87c161b8684be24ecff1f8886" diff --git a/pyproject.toml b/pyproject.toml index af90888..c1dec5f 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -21,7 +21,7 @@ joblib = "^1.3" seaborn = ">=0.12" matplotlib = ">=3.4,!=3.6.1" numpy = ">1.20,!=1.24.0" -statsmodels = ">=0.12.0" +statsmodels = ">=0.13.0" requests = ">=2.0" [tool.poetry.group.dev.dependencies] From c8b7a411482dc2d4dff0cba6fdd8cfa44c298c37 Mon Sep 17 00:00:00 2001 From: "David H. Hagan" Date: Wed, 8 May 2024 16:45:33 -0400 Subject: [PATCH 03/14] add setuptools --- .github/workflows/test-and-report.yml | 3 +++ 1 file changed, 3 insertions(+) diff --git a/.github/workflows/test-and-report.yml b/.github/workflows/test-and-report.yml index 1d26a56..8d2454a 100644 --- a/.github/workflows/test-and-report.yml +++ b/.github/workflows/test-and-report.yml @@ -20,6 +20,9 @@ jobs: uses: snok/install-poetry@v1 with: virtualenvs-create: true + + - name: Install setuptools + run: poetry run pip install setuptools - name: Install dependencies run: poetry install --no-interaction From 9f1d6e1f5ed913c8833466891355ded100b7eb3f Mon Sep 17 00:00:00 2001 From: "David H. Hagan" Date: Wed, 8 May 2024 16:49:07 -0400 Subject: [PATCH 04/14] Fixed gh-action --- .github/workflows/test-and-report.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/test-and-report.yml b/.github/workflows/test-and-report.yml index 8d2454a..2659197 100644 --- a/.github/workflows/test-and-report.yml +++ b/.github/workflows/test-and-report.yml @@ -22,7 +22,7 @@ jobs: virtualenvs-create: true - name: Install setuptools - run: poetry run pip install setuptools + run: poetry run pip install setuptools - name: Install dependencies run: poetry install --no-interaction From da6247600b27ba6b842826b437927b8563c48507 Mon Sep 17 00:00:00 2001 From: "David H. Hagan" Date: Wed, 8 May 2024 16:57:43 -0400 Subject: [PATCH 05/14] Updated poetry --- pyproject.toml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index c1dec5f..1945470 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -40,8 +40,8 @@ sphinx-gallery = "^0.13.0" ipykernel = "^6.24.0" [build-system] -requires = ["poetry>=0.12"] -build-backend = "poetry.masonry.api" +requires = ["poetry-core>=1.0.0"] +build-backend = "poetry.core.masonry.api" [tool.poetry.urls] "Bug Tracker" = "https://github.com/quant-aq/py-smps/issues" \ No newline at end of file From 65a3b4a7c1782df3c0cdaa79dc6138bb1469e711 Mon Sep 17 00:00:00 2001 From: "David H. Hagan" Date: Wed, 8 May 2024 17:01:22 -0400 Subject: [PATCH 06/14] Update pip qmark --- .github/workflows/test-and-report.yml | 3 +++ 1 file changed, 3 insertions(+) diff --git a/.github/workflows/test-and-report.yml b/.github/workflows/test-and-report.yml index 2659197..76204c5 100644 --- a/.github/workflows/test-and-report.yml +++ b/.github/workflows/test-and-report.yml @@ -16,6 +16,9 @@ jobs: with: python-version: ${{ matrix.python }} + - name: Update pip + run: pip install --upgrade pip + - name: Install poetry uses: snok/install-poetry@v1 with: From 310377eac66b51bf6697e705d1d2ec5d17829138 Mon Sep 17 00:00:00 2001 From: "David H. Hagan" Date: Wed, 8 May 2024 17:04:09 -0400 Subject: [PATCH 07/14] Old poetry --- .github/workflows/test-and-report.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/.github/workflows/test-and-report.yml b/.github/workflows/test-and-report.yml index 76204c5..913d05c 100644 --- a/.github/workflows/test-and-report.yml +++ b/.github/workflows/test-and-report.yml @@ -22,6 +22,7 @@ jobs: - name: Install poetry uses: snok/install-poetry@v1 with: + version: 1.3.2 virtualenvs-create: true - name: Install setuptools From 1d65caad15ef360f278986945647daeac5236d3a Mon Sep 17 00:00:00 2001 From: "David H. 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[[package]] @@ -2960,4 +2960,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p [metadata] lock-version = "2.0" python-versions = ">=3.8, <4.0" -content-hash = "c360d0acb3d18be74e10e7f33b0a4b5adcf183b87c161b8684be24ecff1f8886" +content-hash = "95a8e383074cce667a1c940e8993136fd0f20d16deb291f15291d62e41180609" diff --git a/pyproject.toml b/pyproject.toml index 1945470..ef60266 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -20,7 +20,7 @@ setuptools = ">48.0" joblib = "^1.3" seaborn = ">=0.12" matplotlib = ">=3.4,!=3.6.1" -numpy = ">1.20,!=1.24.0" +numpy = ">1.20,!=1.24.0,!=1.24.4" statsmodels = ">=0.13.0" requests = ">=2.0" From 4e4a1e4a5cc6caafc49dba020076831fa36bffe3 Mon Sep 17 00:00:00 2001 From: "David H. Hagan" Date: Wed, 8 May 2024 17:15:36 -0400 Subject: [PATCH 09/14] Update pip in venv --- .github/workflows/test-and-report.yml | 7 +++---- 1 file changed, 3 insertions(+), 4 deletions(-) diff --git a/.github/workflows/test-and-report.yml b/.github/workflows/test-and-report.yml index 913d05c..6582ad5 100644 --- a/.github/workflows/test-and-report.yml +++ b/.github/workflows/test-and-report.yml @@ -16,9 +16,6 @@ jobs: with: python-version: ${{ matrix.python }} - - name: Update pip - run: pip install --upgrade pip - - name: Install poetry uses: snok/install-poetry@v1 with: @@ -26,7 +23,9 @@ jobs: virtualenvs-create: true - name: Install setuptools - run: poetry run pip install setuptools + run: | + poetry run pip install --upgrade pip + poetry run pip install setuptools - name: Install dependencies run: poetry install --no-interaction From 1903cd0c4066c2de37b5ff6d61e3eb767f7033f4 Mon Sep 17 00:00:00 2001 From: "David H. Hagan" Date: Wed, 8 May 2024 17:25:09 -0400 Subject: [PATCH 10/14] List deps --- .github/workflows/test-and-report.yml | 3 +++ pyproject.toml | 2 +- 2 files changed, 4 insertions(+), 1 deletion(-) diff --git a/.github/workflows/test-and-report.yml b/.github/workflows/test-and-report.yml index 6582ad5..0e43089 100644 --- a/.github/workflows/test-and-report.yml +++ b/.github/workflows/test-and-report.yml @@ -26,6 +26,9 @@ jobs: run: | poetry run pip install --upgrade pip poetry run pip install setuptools + + - name: List deps + run: poetry run pip list - name: Install dependencies run: poetry install --no-interaction diff --git a/pyproject.toml b/pyproject.toml index ef60266..1945470 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -20,7 +20,7 @@ setuptools = ">48.0" joblib = "^1.3" seaborn = ">=0.12" matplotlib = ">=3.4,!=3.6.1" -numpy = ">1.20,!=1.24.0,!=1.24.4" +numpy = ">1.20,!=1.24.0" statsmodels = ">=0.13.0" requests = ">=2.0" From a2f334cff2d93866a2bf223fbe16b638715c5188 Mon Sep 17 00:00:00 2001 From: "David H. Hagan" Date: Wed, 8 May 2024 17:26:48 -0400 Subject: [PATCH 11/14] Updated lock file --- poetry.lock | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/poetry.lock b/poetry.lock index aef1985..f342dfb 100644 --- a/poetry.lock +++ b/poetry.lock @@ -2960,4 +2960,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p [metadata] lock-version = "2.0" python-versions = ">=3.8, <4.0" -content-hash = "95a8e383074cce667a1c940e8993136fd0f20d16deb291f15291d62e41180609" +content-hash = "c360d0acb3d18be74e10e7f33b0a4b5adcf183b87c161b8684be24ecff1f8886" From faff998c964e709c682b5bf25ebcd30ef48dd18d Mon Sep 17 00:00:00 2001 From: "David H. Hagan" Date: Wed, 8 May 2024 17:29:42 -0400 Subject: [PATCH 12/14] Update setuptools in gh-actions --- .github/workflows/test-and-report.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/test-and-report.yml b/.github/workflows/test-and-report.yml index 0e43089..643c3e0 100644 --- a/.github/workflows/test-and-report.yml +++ b/.github/workflows/test-and-report.yml @@ -25,7 +25,7 @@ jobs: - name: Install setuptools run: | poetry run pip install --upgrade pip - poetry run pip install setuptools + poetry run pip install --upgrade setuptools - name: List deps run: poetry run pip list From 7a0ea0051f966fbfd4c8e55fa575d979ce21da08 Mon Sep 17 00:00:00 2001 From: "David H. Hagan" Date: Wed, 8 May 2024 17:33:21 -0400 Subject: [PATCH 13/14] changing things --- .github/workflows/test-and-report.yml | 12 ++++-------- 1 file changed, 4 insertions(+), 8 deletions(-) diff --git a/.github/workflows/test-and-report.yml b/.github/workflows/test-and-report.yml index 643c3e0..e32a99c 100644 --- a/.github/workflows/test-and-report.yml +++ b/.github/workflows/test-and-report.yml @@ -21,17 +21,13 @@ jobs: with: version: 1.3.2 virtualenvs-create: true - - - name: Install setuptools + + - name: Install dependencies run: | poetry run pip install --upgrade pip poetry run pip install --upgrade setuptools - - - name: List deps - run: poetry run pip list - - - name: Install dependencies - run: poetry install --no-interaction + poetry run pip list + poetry install --no-interaction - name: Run tests and generate coverage report run: | From 5bbc68a2b30a603bf5aebf38fd2f7bc530f5056b Mon Sep 17 00:00:00 2001 From: "David H. Hagan" Date: Wed, 8 May 2024 17:38:40 -0400 Subject: [PATCH 14/14] Remove py312 support (again) --- .github/workflows/test-and-report.yml | 2 +- poetry.lock | 177 +++++++++----------------- pyproject.toml | 2 +- 3 files changed, 61 insertions(+), 120 deletions(-) diff --git a/.github/workflows/test-and-report.yml b/.github/workflows/test-and-report.yml index e32a99c..82cf095 100644 --- a/.github/workflows/test-and-report.yml +++ b/.github/workflows/test-and-report.yml @@ -5,7 +5,7 @@ jobs: runs-on: ubuntu-latest strategy: matrix: - python: ["3.8", "3.9", "3.10", "3.11", "3.12"] + python: ["3.8", "3.9", "3.10", "3.11"] name: Python ${{ matrix.python }} steps: - name: Checkout branch diff --git a/poetry.lock b/poetry.lock index f342dfb..3134c30 100644 --- a/poetry.lock +++ b/poetry.lock @@ -352,65 +352,6 @@ traitlets = ">=4" [package.extras] test = ["pytest"] -[[package]] -name = "contourpy" -version = "1.1.0" -description = "Python library for calculating contours of 2D quadrilateral 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