From 823f2fb5ed2f606350181d914909155011340376 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?R=C3=A9mi=20Th=C3=A9riault?= <13123390+rempsyc@users.noreply.github.com> Date: Thu, 30 May 2024 16:46:59 +0200 Subject: [PATCH] deprecation message --- DESCRIPTION | 3 ++- R/clean_journals_continents.R | 2 +- README.Rmd | 2 ++ README.md | 2 ++ data-raw/journal_field.R | 6 +----- data/journal_field.rda | Bin 1380 -> 1391 bytes 6 files changed, 8 insertions(+), 7 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index a4fd397..c1d43f5 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -5,7 +5,8 @@ Authors@R: person("Rémi", "Thériault", , "remi.theriault@mail.mcgill.ca", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-4315-6788")) Description: Package to facilitate the creation of data visualization dashboards - through the flexdashboard and easyPubMed packages. + through the flexdashboard and easyPubMed packages. This package is now + deprecated in favour of the pubDashboard package. License: GPL (>= 3) Imports: easyPubMed, diff --git a/R/clean_journals_continents.R b/R/clean_journals_continents.R index 3139f8f..a9ed1d5 100644 --- a/R/clean_journals_continents.R +++ b/R/clean_journals_continents.R @@ -31,7 +31,7 @@ continent_order <- function(short = FALSE) { #' @noRd clean_journal_names <- function(journal) { - x <- gsub("&", "and", journal, fixed = TRUE) + x <- gsub("&", "&", journal, fixed = TRUE) x <- gsub(" of the United States of America", "", x, fixed = TRUE) x <- gsub(":.*", "", x) x <- gsub("[(].*", "", x) diff --git a/README.Rmd b/README.Rmd index bef4fa8..d3b8a8b 100644 --- a/README.Rmd +++ b/README.Rmd @@ -26,6 +26,8 @@ knitr::opts_chunk$set( [![stars](https://img.shields.io/github/stars/rempsyc/pubmedDashboard?style=social)](https://github.com/rempsyc/pubmedDashboard/stargazers) +**This package is now deprecated in favour of the [`pubDashboard`](https://rempsyc.github.io/pubDashboard/) package.** + The goal of `pubmedDashboard` is to facilitate the creation of pretty data visualization dashboards using the `flexdashboard` and `easyPubMed` packages. ## Installation diff --git a/README.md b/README.md index 7518971..3757ee0 100644 --- a/README.md +++ b/README.md @@ -17,6 +17,8 @@ experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](h [![stars](https://img.shields.io/github/stars/rempsyc/pubmedDashboard?style=social)](https://github.com/rempsyc/pubmedDashboard/stargazers) +**This package is now deprecated in favour of the [`pubDashboard`](https://rempsyc.github.io/pubDashboard/) package.** + The goal of `pubmedDashboard` is to facilitate the creation of pretty data visualization dashboards using the `flexdashboard` and `easyPubMed` packages. diff --git a/data-raw/journal_field.R b/data-raw/journal_field.R index 8e521f1..4438b84 100644 --- a/data-raw/journal_field.R +++ b/data-raw/journal_field.R @@ -17,7 +17,7 @@ psychology <- c( "Psychological science", "Child development", "Developmental science", - "Personality and social psychology bulletin", + "Personality & social psychology bulletin", "Nature human behaviour" ) @@ -72,10 +72,6 @@ journal_field <- data.frame( ) journal_field$journal_short <- clean_journal_names(journal_field$journal) -# journal_field$journal_short <- gsub(":.*", "", journal_field$journal) -# journal_field$journal_short <- gsub("[(].*", "", journal_field$journal_short) -# journal_field$journal_short <- tools::toTitleCase(journal_field$journal_short) -# journal_field$journal_short <- trimws(journal_field$journal_short) journal_field$field <- ifelse( journal_field$journal %in% psychology, "psychology", ifelse( diff --git a/data/journal_field.rda b/data/journal_field.rda index 74a6576c43f685dd934edb81edff1fbec9040ccd..3744b7099cfeebdbf4886ff24cd2c79d9be2423e 100644 GIT binary patch literal 1391 zcmV-#1(5neT4*^jL0KkKSrJqL+5iM%|HS|HZ(aR={V+fG{@}m=-{3$X0FVFy;08ZB zE@7Q80000Yf`d&qplAW000000G5`Po03u}2N`9&805oDW8f0kEkQo{KZiAX^Ex@wGT)c8Vrpz8f3x_G%{(XO#loK27@Mm0h2%g0LhRI4m2`p zrcD405C(%LfB}<0007C54FpLhf&vDLc$z&_{U~}zsiB}T8W}Y80imXilxTWlh(6_= z(`N2WGu$BmXrbtYK2vRgM@*VcxAuKjNBTq8u7DBcfj`{O?QX@Juqi zx`tReZco|0O9+CT7&2f)P&p1cl@S*P7A#RUWLU)4a>GRhBpiyOI1$d<-nfq-B9IkM zsFV@4Pzs*Nf-lcL2q0q=9F9%<_tqaTHF_~2lw@-Ju=njQbq1{JTAGwZKh32wtwH>f z34L3AXqmTVmguUkez;n)NG&7FVU(7)@PZBdykp_!^SSm7L z=YtjxI0;Bt3Z@w>321`AVu4Un;V?5vsi6I<2-wE$txRFAiq9TuwX(|E^1EzcV|vsQ z*oLlb<_+}29n|fFnnI#T1_Y=Y5Go{qNEI9%IW*a=tuohDQNn4ijAia+EEeB}66?&b z;|M|=#$Oeb*RbcX>n}CXA&iG-x%4 zeXT=OjrNgNyLHOf_e|+Dh`@mc!%ub*g7}(O!*D_vQ6n-8LB5k5Mqx3j5;V{&8)J<) z@1-e9Qh*1DAOavfo3vj^Ale#V54;&eV?cEeTnljAj97?&)8h**i?T4qG7EtuyR$JK z{oQKxmcqVXtbT2 z;kkW5rMH+Jy&R{if=8fbsS2;9=QgS61S7PHc#iX+?1v$JWbmFTCC(x|hlH?{A4!4E z2t%N09iVLwnW;I94cdgvpvrlk8jk$r?jxs@l1U&C2pQ)jkqLnK;GGXpspE*1?H%2C zTh-s~@c`#L&%7H=0GM9;EL}wE4yZ}wt;6ZUMi7LC1qKQaZ-~&c9et4`9;g)(MW*IV zV;TjcqX8Dh#IcB-mm!H8cmOpS{d2s{uo;^JW}>WS!O;#~px8T}zO2FjhC#EXQE<@P z%fQ9>N+0ovaSX(0dr literal 1380 zcmV-q1)KUpT4*^jL0KkKS#P+F;Q$0-|HS|HZ(aO<{V+fG{@}m=-{3$X0FVFy;08Z5 zL@Y1>001F~s%=d@GJ&V40iXZ?4^Yvg6GK6u000dF1wBLn8UO$Q0BFzv0000E2AXN0 z(9qDx&_pbZApdW{~TqeqlzdSZw_1)bAo?o2b> zApcmQ>V!Q8+W?N4G@Ebk`fQK$hqqk-Bf(#Mg4e0wokV7NR&2&fDIok02tD6;7Cx5w%bX zp6G%v_Megn7{v#Ze*N{Y(aT<}NM#uuzYISerOuGmomvvOkr4c#N~HuI$`C2q#@Q8P zDMg9Tnh=nRK-3=NMb*eD8mklFCn?1uD;u^ns1ileLZYf-Copg~GC=D@9wji2CxdWP za7Pt4hqyYL&<4SoSUMt&s|eV}?X65DXcwdHo$z{d5cC9w@$GnhBi40hAD z5@`yFAQ%#$Xh5iv0U%Uxbl;}UZE2Res*V#)bYm}bDPXZ{Oc#Q`5eRTG{a7QbS<7M8 z7#xKh=ckwEwek+QdAHCb0Kt`*Jrm#9yHaCiWdi1|0Rx$%n9aAkKv>Uk+CQ6hJ zW#f0&M23Zd19cT)h>3fmX&Ol}sP}Hj)2nsKHniK`yJ4j@2CFht-SI-u^&%VJnH&hexu{Ry5B z9}xhv6hscmgd<{%=q!5tvaqRpl+=u-(**{JYuc}Ji=*anqqzNf#yC+UDwx$02h_yHO~Z2fgG+BPJ306s z$_XBEmZU1ahnU)@s1T0QDd9WLbFLhP^^?GOWS2XHc@F_$C_aM&m=K3J(mO!fA2Cpz zrUvaoW>953?;S^ea(0o^$H^p+2m}oCl1PNWd{9nzq*U=lO81W5tS#*C@^=7p9p~H) zrhrT@eU>hwbcakN@z&w>;Ufq_Ljr>Z2eZOxSq`qak`GJ@i6YZ;CNYfy(a(U3V&YiD zPP>rAjlJ*W%?Wh8+lp87Z!G*L=m;#{V})MOS>RYe(v5)eUz zTS^Y!1&mO{kplhFz*z3g`fL|K9z)h-2uyiRy3Z@xlejEk2p3Rz^GPIQ-eREjAP%JN z@X+iJx394Pb_nn>50~fm0kGTfVr)I9qCi;!NWmi{k~~f?QFGh}1E4y@XnUM!`^XU< z^R&d`d-`BExfpq9(1DtE7|WE9VF-|Zv6X;`LKv#FXm%eD!8X*m2 zD1>|^LMBAM){W=c>^hscodJ;zlujn>UJK442_z&WWPv1RT7YtZ^y|Q}hos_nI+ti> zJj5u-3kLf=roz%0h9P`|+;2CWPJ!@rc(=b1$aEP5AVdJn+9R~+AwV0(nn1hb3Xtm* m&sq0NFp#2x5DsSms=%s`I)ndy*ZxHX{x0N-aG@aIaT~%L6Jxjl