MSIsensor-pro -z parameter

[uso2015]

Hi,

  When I use -z 0 (default), the result is:
  Total_Number_of_Sites	Number_of_Unstable_Sites	%
  28028	68	0.24

  but I use -z 1, the result is:
  Total_Number_of_Sites	Number_of_Unstable_Sites	%
  28028	2510	8.96

 tumor average depth: 286x
 normal average depth: 160x

 the result is different, which value I use ?

software version: 1.3.0

[PengJia6]

If you don't have a large amount of data to test, we recommend using the default parameter, i.e., -z 0. Our local data testing shows that the performance of the -z 0 parameter is better than -z 1.