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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 351 151

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 23 14

Repositories

Showing 10 of 411 repositories
  • deep-neurographs Public

    A Python package that utilizes machine learning to correct split mistakes in a fragmented neuron segmentation.

    AllenInstitute/deep-neurographs’s past year of commit activity
    Jupyter Notebook 3 MIT 0 0 0 Updated Jan 31, 2025
  • npc_sessions_cache Public

    Scripts, notebooks and plots that operate on NWB or NWB-like objects from `npc_sessions` in the cloud.

    AllenInstitute/npc_sessions_cache’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 31, 2025
  • skeleton_shollstice Public

    Shedding light on morphology skeletons through sholl analysis

    AllenInstitute/skeleton_shollstice’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 31, 2025
  • MicronsFunctionalConnectomics Public

    Code for "Functional connectomics spanning multiple areas of mouse visual cortex" by MICrONs Consortium et al.

    AllenInstitute/MicronsFunctionalConnectomics’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 1 0 0 Updated Jan 31, 2025
  • ET_connectivity Public

    Code used to analyze the connectivity of ET neurons in MICrONs dataset

    AllenInstitute/ET_connectivity’s past year of commit activity
    Jupyter Notebook 3 0 0 0 Updated Jan 31, 2025
  • dynamic_routing_analysis Public

    Tools for accessing, processing and presenting data from Dynamic Routing experiments.

    AllenInstitute/dynamic_routing_analysis’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jan 30, 2025
  • vis Public

    Typescript packages for building big-data visualization tools & components, with examples for a variety of common data types & formats

    AllenInstitute/vis’s past year of commit activity
    TypeScript 5 BSD-3-Clause 0 0 4 Updated Jan 30, 2025
  • scrattch.mapping Public

    Genearlized mapping scripts for RNA-seq and Patch-seq data

    AllenInstitute/scrattch.mapping’s past year of commit activity
    R 11 2 8 0 Updated Jan 30, 2025
  • scrattch.taxonomy Public

    Allen Institute Taxonomy building R package

    AllenInstitute/scrattch.taxonomy’s past year of commit activity
    HTML 1 1 10 0 Updated Jan 30, 2025
  • merquaco Public
    AllenInstitute/merquaco’s past year of commit activity
    Jupyter Notebook 5 3 3 0 Updated Jan 30, 2025
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