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master branch bidsonym#2

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ShriramVarada wants to merge 19 commits intoBRAINSia:masterBRAINSia/BIDSonym:masterfrom ShriramVarada:masterShriramVarada/BIDSonym:masterCopy head branch name to clipboard

+357-137

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Commits on Jul 9, 2020

• Integration of Arjit's code with original

  

  Shriram Varadarajan

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  1e7eed9

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Commits on Jul 13, 2020

• documentation: adding deepdefacer to the list of algorithms

  ShriramVarada

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  1ce5ac2

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Commits on Jul 14, 2020

• ENH: Fix for deepdefacer algorithm. Utilizing the tensorflow GPU docker image

  ShriramVarada

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  789b70c

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Commits on Jul 15, 2020

• ENH: Attempt to merge Arjit's mri_deface

  ShriramVarada

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  af1c5ad

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• fix import os

  ShriramVarada

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  a7d965d

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• remove extra nii.gz file

  ShriramVarada

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  ad16893

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• ENH: Clamping and logging mri_deface from Arjit

  ShriramVarada

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Commits on Jul 16, 2020

• Not tested: del option for mridefacer and deepdefacer

  ShriramVarada

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  ad0bd61

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• Correction to the master branch peerholz: move if statements

  ShriramVarada

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  de96f52

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• del option for mridefacer, delete old file r and replace it with defaced one.

  ShriramVarada

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Commits on Jul 20, 2020

• Added LAB MANUAL link

  ShriramVarada

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Commits on Jul 28, 2020

• Testing comit

  ShriramVarada

  committed
  581b73b

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• testing errors on the deface_t2w() function

  ShriramVarada

  committed
  a69d0b7

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• Not clear which defaced T1w image to use on the T2w file

  ShriramVarada

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  cb0ea90

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• Added neurodebain image that has docker to run deepdefacer

  ShriramVarada

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  496e466

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Commits on Jul 29, 2020

• ENH: Modality label for defacing T2w images using already given algorithms

  ShriramVarada

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  b8fc979

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• Update documentation for t2w modality in README

  ShriramVarada

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  2735aa2

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Commits on Aug 5, 2020

• validation removed for now

  ShriramVarada

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  fa50f5e

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Commits on Aug 17, 2020

• modality fix for mridefacer

  ShriramVarada

  committed
  de0d3f7

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