PlaqView Dockerfiles

Wei Feng Ma, MSTP UVA. Miller Lab.

This repo contains the Dockerfile to reproduce rstudio sessions to process scRNA-seq data and develop PlaqView

OPTION #1

1. install Docker desktop. See: https://www.docker.com/
2. start Docker desktop
3. from Terminal run the following command: docker pull wfma888/plaqviewmaster:12082021 (or whatever tag you want)
4. start the container (see below for example snippet codes)

OPTION #2

1. install Docker desktop. See: https://www.docker.com/
2. start Docker desktop
3. from Terminal, build the Docker image
4. start the customized Docker image
5. view the RStudio session in your browser.

EXAMPLE CODE SNIPPETS TO INITIATE DOCKER

Note: directories in the snippets are specific for my computer, you need to adjust the working directory (via cd) first!