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99 Open 1,899 Closed
99 Open 1,899 Closed
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Issues list

DADA2 Error Rate Plots - is this okay?
#2052 opened Nov 13, 2024 by suminayeoh
1
General question about pseudo-pooling
#2047 opened Nov 1, 2024 by cjfields
1
Error estimating error rates and plotting quality profiles
#2045 opened Oct 23, 2024 by Guillermouceda
6
DADA2 ITS trimming question
#2044 opened Oct 22, 2024 by UniAlberta
4
How does a small database affect the taxonomic assignment?
#2023 opened Sep 18, 2024 by Fmicro23
1
truncLenKeep enhancement
#2020 opened Sep 15, 2024 by LukeLikesDirt
3
DADA2 analysis for two different platforms MISEQ and Novaseq -Merging of sequence table
#2018 opened Sep 13, 2024 by Jayakanthankk
3
Parameters optimal to produce COI exact variants.
#2015 opened Sep 10, 2024 by aimirza
4
Formatting RDP version 19 taxonomic database for DADA2 enhancement Priority
#2014 opened Sep 5, 2024 by jheiman06
2
Merged files, where should I start in the pipeline and how?
#2012 opened Sep 5, 2024 by seqlt
2
Different Illumina sequencing kits (v2 and v3) - preprocessing
#2011 opened Sep 4, 2024 by luizastein
3
Large variability in sequence lengths after merging paired reads
#2010 opened Sep 3, 2024 by alannajmcc16
1
Large amount of losses in read number during processing: PacBio Hifi reads
#2009 opened Aug 30, 2024 by HitMonk
4
Is filterAndTrim effect to NA results or because minBoot? What parameter setting ​​should be used appropriately?
#2008 opened Aug 30, 2024 by WP-SMILE
5
filterAndTrim
#2007 opened Aug 27, 2024 by AliciaBalbin
1
FilterAndTrim discards huge amount of reads with trunclen option
#2006 opened Aug 23, 2024 by sofiehn
9
learnErrors() on PacBio 16S very slow
#2005 opened Aug 22, 2024 by trawler-crawler
8
Incertae_sedis VS NA Taxonomic Assignment
#2004 opened Aug 22, 2024 by mya-darsan
1
about plotQualityProfile and derepFastq function
#2003 opened Aug 22, 2024 by dstrgcv
1
Issue with Primer Removal- Residual Primers After Cutadapt
#2001 opened Aug 16, 2024 by alannajmcc16
2
How to use cutadapt on merged forward and reverse paired end files? Keep running into errors.
#2000 opened Aug 15, 2024 by kdbchau
12
【ERROR】Exception: An error was encountered while running DADA2 in R (return code -11)
#1999 opened Aug 14, 2024 by AlenaYoung
1
High number of bimeras/ messy error plots?
#1996 opened Aug 5, 2024 by brittneybrowning
2
Low diversity in the beginning of the sequence & DADA2 impacts
#1995 opened Jul 31, 2024 by andrebolerbarros
3
Combining ASV data of same samples from two different run
#1994 opened Jul 31, 2024 by MizanurRahman24
5
ProTip! What’s not been updated in a month: updated:<2024-10-14.