Reproducing the simulation study investigating the impact of autocorrelated camera trap detections on occupancy models by Goldstein et al.
The files in this repository are organized into the following directories:
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code_casestudy - contains code files for running the case study with SnapshotUSA detection histories
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code_helper - contains code files not meant to be called directly, which load in helper functions for use in simulations and
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code_simulations - contains scripts to execute the four simulation studies and to summarize and visualize the results of those simulations
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input_data - contains the SnapshotUSA detection histories used in the case study
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intermediate - catches intermediate files created during code execution, and is empty to begin with.
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plots - contains the data visualizations in the manuscript and supplemental materials
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results_tables - contains the results output by the original simulation and case studies, for use without re-running all analyses
Each subdirectory contains a README.md file detailing the code and data files contained.