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Zarr
Hyo-Kyung Lee edited this page Jan 12, 2023
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8 revisions
Use the following to test the latest.
python -m pip install git+https://github.com/zarr-developers/zarr-python.git
It cannot create Zarr file using DataTree from Kerchunk reference file.
File "/Users/hyoklee/miniconda3/lib/python3.9/site-packages/zarr/core.py", line 1888, in _process_chunk
chunk = ensure_ndarray_like(cdata).view(self._dtype)
ValueError: When changing to a larger dtype, its size must be a divisor of the total size in bytes of the last axis of the array.
The above error is caused by the following code:
if write_direct:
# optimization: we want the whole chunk, and the destination is
# contiguous, so we can decompress directly from the chunk
# into the destination array
if self._compressor:
if isinstance(cdata, PartialReadBuffer):
cdata = cdata.read_full()
self._compressor.decode(cdata, dest)
else:
chunk = ensure_ndarray_like(cdata).view(self._dtype)
chunk = chunk.reshape(self._chunks, order=self._order)
np.copyto(dest, chunk)
return
It fails to handle the following attribute:
ATL08dt.h5.zarr/ancillary_data/land/night_thresh/.zattrs: "description": "Solar elevation threshold for determining night time conditions. (Default =0.0)",
Add the following lines to core.py
:
print(dest)
print(self._chunks)
print(self._dtype)
Here's the output:
[b'Solar elevation threshold for determining night time conditions. (Default =0.0)']
(1,)
|S80
The use of 'S' is not recommended.