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    • WDL
      0000Updated Jan 18, 2025Jan 18, 2025
    • backstage

      Public
      Broad Institute Engineering Portal is an Internal Developer Platform (Spotify Backstage by another name)
      TypeScript
      0213Updated Jan 18, 2025Jan 18, 2025
    • cromwell

      Public
      Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
      Scala
      BSD 3-Clause "New" or "Revised" License
      3601k74549Updated Jan 18, 2025Jan 18, 2025
    • monorepo

      Public
      Compendium of tools for the Imaging Platform
      Python
      BSD 3-Clause "New" or "Revised" License
      1990Updated Jan 18, 2025Jan 18, 2025
    • Vue
      BSD 3-Clause "New" or "Revised" License
      1201Updated Jan 18, 2025Jan 18, 2025
    • Workflow for processing cpg0016-jump profiles
      Python
      BSD 3-Clause "New" or "Revised" License
      6261Updated Jan 17, 2025Jan 17, 2025
    • gatk

      Public
      Official code repository for GATK versions 4 and up
      Java
      Other
      5961.7k1.2k136Updated Jan 17, 2025Jan 17, 2025
    • Web application for curating loss of function variants
      Python
      MIT License
      14473Updated Jan 17, 2025Jan 17, 2025
    • gatk-sv

      Public
      A structural variation pipeline for short-read sequencing
      Python
      BSD 3-Clause "New" or "Revised" License
      721757424Updated Jan 17, 2025Jan 17, 2025
    • ml4h

      Public
      Python
      Other
      241283021Updated Jan 17, 2025Jan 17, 2025
    • mitograph

      Public
      Rust
      0000Updated Jan 17, 2025Jan 17, 2025
    • rawls

      Public
      Rawls service for DSDE
      Scala
      BSD 3-Clause "New" or "Revised" License
      426010Updated Jan 17, 2025Jan 17, 2025
    • seqr

      Public
      web-based analysis tool for rare disease genomics
      Python
      GNU Affero General Public License v3.0
      89180544Updated Jan 17, 2025Jan 17, 2025
    • Code for the DepMap portal at depmap.org
      Python
      BSD 2-Clause "Simplified" License
      1806Updated Jan 17, 2025Jan 17, 2025
    • hail-based pipelines for annotating variant callsets and exporting them to elasticsearch
      Python
      MIT License
      2022242Updated Jan 17, 2025Jan 17, 2025
    • thurloe

      Public
      A simple service to store arbitrary key/value pairs
      Scala
      BSD 3-Clause "New" or "Revised" License
      0304Updated Jan 17, 2025Jan 17, 2025
    • warp

      Public
      WDL Analysis Research Pipelines
      WDL
      BSD 3-Clause "New" or "Revised" License
      100207716Updated Jan 17, 2025Jan 17, 2025
    • This repository hosts DSP AppSec internal infrastructure apps deployed in GKE.
      Python
      BSD 3-Clause "New" or "Revised" License
      2605Updated Jan 17, 2025Jan 17, 2025
    • Python
      BSD 3-Clause "New" or "Revised" License
      0000Updated Jan 17, 2025Jan 17, 2025
    • Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
      Python
      MIT License
      6421070Updated Jan 17, 2025Jan 17, 2025
    • Workbench utility libraries
      Scala
      Other
      4903Updated Jan 17, 2025Jan 17, 2025
    • juniper

      Public
      Java
      BSD 3-Clause "New" or "Revised" License
      5905Updated Jan 17, 2025Jan 17, 2025
    • celldega

      Public
      Spatial omics analysis and visualization library
      Jupyter Notebook
      Other
      0417Updated Jan 17, 2025Jan 17, 2025
    • seqr-helm

      Public
      Helm charts for the seqr project
      Python
      BSD 3-Clause "New" or "Revised" License
      1100Updated Jan 17, 2025Jan 17, 2025
    • Python
      0301Updated Jan 17, 2025Jan 17, 2025
    • Broad Viral Genomics base docker image
      Shell
      Other
      1111Updated Jan 17, 2025Jan 17, 2025
    • A helm repo for Broad Data Science Platforms helm charts
      Mustache
      1504Updated Jan 17, 2025Jan 17, 2025
    • sam

      Public
      workbench identity and access management
      Scala
      BSD 3-Clause "New" or "Revised" License
      1242329Updated Jan 17, 2025Jan 17, 2025
    • Pepper Study Server
      Java
      BSD 3-Clause "New" or "Revised" License
      5814Updated Jan 17, 2025Jan 17, 2025
    • Python
      0100Updated Jan 17, 2025Jan 17, 2025