Merge remote-tracking branch 'origin/develop' into ts_h5fl_reg

.devcontainer/Dockerfile

@@ -1,5 +1,5 @@
 FROM mcr.microsoft.com/devcontainers/base:debian
 
 RUN apt-get update && apt-get -y install --no-install-recommends \
-  build-essential cmake cmake-curses-gui doxygen git graphviz \
+  build-essential cmake cmake-curses-gui default-jdk doxygen gfortran git graphviz \
   less libtool-bin libyajl-dev mpi-default-dev ninja-build valgrind wget

.devcontainer/devcontainer.json

@@ -10,6 +10,7 @@
         "ms-python.python",
         "ms-toolsai.jupyter",
         "ms-vscode.cpptools",
+        "ms-vscode.cpptools-extension-pack",
         "ms-vscode.live-server",
         "ms-vscode-remote.remote-containers",
         "ms-azuretools.vscode-docker",

.github/workflows/cmake-ctest.yml

@@ -149,7 +149,7 @@ jobs:
         shell: bash
 
       - name: Sign files with Trusted Signing
-        uses: azure/[email protected].0
+        uses: azure/[email protected].1
         with:
           azure-tenant-id: ${{ secrets.AZURE_TENANT_ID }}
           azure-client-id: ${{ secrets.AZURE_CLIENT_ID }}
@@ -695,7 +695,7 @@ jobs:
         shell: pwsh
 
       - name: Sign files with Trusted Signing (Windows_intel)
-        uses: azure/[email protected].0
+        uses: azure/[email protected].1
         with:
           azure-tenant-id: ${{ secrets.AZURE_TENANT_ID }}
           azure-client-id: ${{ secrets.AZURE_CLIENT_ID }}

.github/workflows/release-files.yml

@@ -221,7 +221,7 @@ jobs:
       - name: PreRelease tag
         id: create_prerelease
         if: ${{ (inputs.use_environ == 'snapshots') }}
-        uses: softprops/action-gh-release@01570a1f39cb168c169c802c3bceb9e93fb10974 # v2.1.0
+        uses: softprops/action-gh-release@c95fe1489396fe8a9eb87c0abf8aa5b2ef267fda # v2.2.1
         with:
           tag_name: "${{ inputs.use_tag }}"
           prerelease: true
@@ -249,7 +249,7 @@ jobs:
       - name: Release tag
         id: create_release
         if: ${{ (inputs.use_environ == 'release') }}
-        uses: softprops/action-gh-release@01570a1f39cb168c169c802c3bceb9e93fb10974 # v2.1.0
+        uses: softprops/action-gh-release@c95fe1489396fe8a9eb87c0abf8aa5b2ef267fda # v2.2.1
         with:
           tag_name: "${{ inputs.use_tag }}"
           prerelease: false

.github/workflows/scorecard.yml

@@ -67,6 +67,6 @@ jobs:
 
       # Upload the results to GitHub's code scanning dashboard.
       - name: "Upload to code-scanning"
-        uses: github/codeql-action/upload-sarif@f09c1c0a94de965c15400f5634aa42fac8fb8f88 # v3.27.5
+        uses: github/codeql-action/upload-sarif@dd746615b3b9d728a6a37ca2045b68ca76d4841a # v3.28.8
         with:
           sarif_file: results.sarif

test/h5test.h

@@ -204,7 +204,7 @@ H5TEST_DLLVAR MPI_Info h5_io_info_g; /* MPI INFO object for IO */
 
 /* Macros for the different TestExpress levels for expediting tests */
 #define H5_TEST_EXPRESS_EXHAUSTIVE 0 /** Exhaustive run; tests should take as long as necessary */
-#define H5_TEST_EXPRESS_FULL       1 /** Full run; tests should take no more than 30 minutes    */
+#define H5_TEST_EXPRESS_FULL       1 /** Full run; tests should take no more than 20 minutes    */
 #define H5_TEST_EXPRESS_QUICK      2 /** Quick run; tests should take no more than 10 minutes   */
 #define H5_TEST_EXPRESS_SMOKE_TEST 3 /** Smoke test; tests should take no more than 1 minute    */
 

test/testframe.c

@@ -158,6 +158,12 @@ TestInit(const char *ProgName, void (*TestPrivateUsage)(FILE *stream),
     /* Initialize value for TestExpress functionality */
     h5_get_testexpress();
 
+    /* Enable alarm timer for test program once TestExpress setting
+     * has been determined
+     */
+    if (TestAlarmOn() < 0)
+        MESSAGE(5, ("Couldn't enable test alarm timer\n"));
+
     /* Record the program name and private routines if provided. */
     TestProgName = ProgName;
     if (NULL != TestPrivateUsage)
@@ -461,10 +467,6 @@ PerformTests(void)
         MESSAGE(2, ("Testing  -- %s (%s) \n", TestArray[Loop].Description, TestArray[Loop].Name));
         MESSAGE(5, ("===============================================\n"));
 
-        if (TestAlarmOn() < 0)
-            MESSAGE(5, ("Couldn't enable test alarm timer for test -- %s (%s) \n",
-                        TestArray[Loop].Description, TestArray[Loop].Name));
-
         if (TestArray[Loop].TestSetupFunc)
             TestArray[Loop].TestSetupFunc(TestArray[Loop].TestParameters);
 
@@ -473,8 +475,6 @@ PerformTests(void)
         if (TestArray[Loop].TestCleanupFunc)
             TestArray[Loop].TestCleanupFunc(TestArray[Loop].TestParameters);
 
-        TestAlarmOff();
-
         TestArray[Loop].TestNumErrors = TestNumErrs_g - old_num_errs;
 
         MESSAGE(5, ("===============================================\n"));
@@ -573,6 +573,8 @@ TestShutdown(void)
 
     free(TestArray);
 
+    TestAlarmOff();
+
     return SUCCEED;
 }
 
@@ -829,30 +831,38 @@ SetTestMaxNumThreads(int max_num_threads)
 herr_t
 TestAlarmOn(void)
 {
+    /* A TestExpress setting of H5_TEST_EXPRESS_EXHAUSTIVE should allow
+     * tests to run for as long as necessary, so avoid enabling an
+     * alarm-style timer here that would, by default, kill the test.
+     */
+    if (GetTestExpress() == H5_TEST_EXPRESS_EXHAUSTIVE)
+        return SUCCEED;
 #ifdef H5_HAVE_ALARM
-    char         *env_val   = getenv("HDF5_ALARM_SECONDS"); /* Alarm environment */
-    unsigned long alarm_sec = H5_ALARM_SEC;                 /* Number of seconds before alarm goes off */
+    else {
+        char         *env_val   = getenv("HDF5_ALARM_SECONDS"); /* Alarm environment */
+        unsigned long alarm_sec = H5_ALARM_SEC;                 /* Number of seconds before alarm goes off */
 
-    /* Get the alarm value from the environment variable, if set */
-    if (env_val != NULL) {
-        errno     = 0;
-        alarm_sec = strtoul(env_val, NULL, 10);
-        if (errno != 0) {
-            if (TestFrameworkProcessID_g == 0)
-                fprintf(stderr, "%s: error while parsing value (%s) specified for alarm timeout\n", __func__,
-                        env_val);
-            return FAIL;
-        }
-        else if (alarm_sec > (unsigned long)UINT_MAX) {
-            if (TestFrameworkProcessID_g == 0)
-                fprintf(stderr, "%s: value (%lu) specified for alarm timeout too large\n", __func__,
-                        alarm_sec);
-            return FAIL;
+        /* Get the alarm value from the environment variable, if set */
+        if (env_val != NULL) {
+            errno     = 0;
+            alarm_sec = strtoul(env_val, NULL, 10);
+            if (errno != 0) {
+                if (TestFrameworkProcessID_g == 0)
+                    fprintf(stderr, "%s: error while parsing value (%s) specified for alarm timeout\n",
+                            __func__, env_val);
+                return FAIL;
+            }
+            else if (alarm_sec > (unsigned long)UINT_MAX) {
+                if (TestFrameworkProcessID_g == 0)
+                    fprintf(stderr, "%s: value (%lu) specified for alarm timeout too large\n", __func__,
+                            alarm_sec);
+                return FAIL;
+            }
         }
-    }
 
-    /* Set the number of seconds before alarm goes off */
-    alarm((unsigned)alarm_sec);
+        /* Set the number of seconds before alarm goes off */
+        alarm((unsigned)alarm_sec);
+    }
 #endif
 
     return SUCCEED;