Added debian directory for building from source

debian/README.Debian

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+tvb-gdist for Debian
+
+External Library Geodesic
+=========================
+
+The `gdist` module is a Cython interface to a C++ library
+(http://code.google.com/p/geodesic/) for computing
+geodesic distance which is the length of shortest line between two
+vertices on a triangulated mesh in three dimensions, such that the line
+lies on the surface.
+
+The algorithm is due Mitchell, Mount and Papadimitriou, 1987; the implementation
+is due to Danil Kirsanov and the Cython interface to Gaurav Malhotra and
+Stuart Knock.
+
+
+Original library (published under MIT license):
+http://code.google.com/p/geodesic/
+
+We added a python wrapped and made small fixes to the original library, to make it compatible with cython.
+
+To install this, either run `pip install gdist` or download
+sources from Github and run `python setup.py install` in current folder.
+
+Basic test could be::
+
+    python
+    import gdist
+
+
+Python 2.7, Cython, and a C++ compiler are required.
+
+Debian package
+==============
+
+In order to produce a Debian package, assuming you have the requisite tools
+installed (`apt-get install devscripts python-all-dev python-stdeb`)::
+
+    cd debian
+    debuild -us -uc
+    cd ../../
+
+
+and you should find a suitable deb file for your system.
+
+ -- umar haruna abdullahi <[email protected]>  Sun, 01 Jul 2018 12:24:32 +0100

debian/changelog

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+tvb-gdist (1.5.6-1) unstable; urgency=medium
+
+  * Initial release. Closes: #896927
+
+ -- umar haruna abdullahi <[email protected]>  Sun, 01 Jul 2018 12:24:32 +0100

debian/compat

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+11

debian/control

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+Source: tvb-gdist
+Maintainer: the virtual brain <[email protected]>
+Uploaders: umar haruna abdullahi <[email protected]>
+Section: python
+Priority: optional
+Build-Depends: cython,
+               debhelper (>=11),
+               dh-python,
+               python-all,
+               python-numpy,
+               python-scipy,
+               python-setuptools
+Standards-Version: 4.1.4.2
+Vcs-Browser: https://github.com/the-virtual-brain/tvb-geodesic
+Vcs-Git: https://github.com/the-virtual-brain/tvb-geodesic.git
+Homepage: http://www.thevirtualbrain.org
+
+Package: tvb-gdist
+Architecture: any
+Depends: ${misc:Depends}, ${python:Depends}, ${shlibs:Depends}
+Description: gdist module is a Cython interface
+ computing geodesic distance which is the length of shortest
+ line between two vertices on a triangulated mesh in three
+ dimensions, such that the line lies on the surface

debian/copyright

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+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: tvb-library
+Upstream-Contact: TVB TEAM <[email protected]>
+Source: https://github.com/the-virtual-brain/tvb-library
+
+Files: *
+Copyright: 2012-2017 Baycrest Centre for Geriatric Care ("Baycrest") and others
+License: GPL-3.0+
+
+Files: debian/*
+Copyright: 2018 Baycrest Centre for Geriatric Care ("Baycrest") and others
+License: GPL-3.0+
+
+License: GPL-3.0+
+ This program is free software: you can redistribute it and/or modify it under the
+ terms of the GNU General Public License as published by the Free Software Foundation,
+ either version 3 of the License, or (at your option) any later version.
+ This program is distributed in the hope that it will be useful, but WITHOUT ANY
+ WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+ PARTICULAR PURPOSE.  See the GNU General Public License for more details.
+ You should have received a copy of the GNU General Public License along with this
+ program.  If not, see <http://www.gnu.org/licenses/>.
+ .
+ When using The Virtual Brain for scientific publications, please cite it as follows:
+ Paula Sanz Leon, Stuart A. Knock, M. Marmaduke Woodman, Lia Domide,
+ Jochen Mersmann, Anthony R. McIntosh, Viktor Jirsa (2013)
+ The Virtual Brain: a simulator of primate brain network dynamics.
+ Frontiers in Neuroinformatics (7:10. doi: 10.3389/fninf.2013.00010)
+ .
+ On Debian systems, the complete text of the GNU General Public License
+ Version 3 can be found in `/usr/share/common-licenses/GPL-3'.

debian/rules

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+#!/usr/bin/make -f
+
+#export DH_VERBOSE = 1
+export PYBUILD_NAME = tvb-gdist
+export DEB_BUILD_MAINT_OPTIONS = hardening=+all
+DPKG_EXPORT_BUILDFLAGS = 1
+
+include /usr/share/dpkg/buildflags.mk
+
+%:
+	dh $@ --with python2 --buildsystem=pybuild

debian/source/format

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+3.0 (quilt)

debian/source/lintian-overrides

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+tvb-gdist source: debian-watch-does-not-check-gpg-signature

debian/tvb-gdist.lintian-overrides

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+tvb-gdist: no-upstream-changelog
+tvb-gdist: dependency-on-python-version-marked-for-end-of-life

debian/watch

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+version=3
+opts=uversionmangle=s/(rc|a|b|c)/~$1/ \
+https://pypi.debian.net/tvb-gdist/tvb-gdist-(.+)\.(?:zip|tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz)))