bugfix: Update project structure and Enhance specifications and configs settings

[esloch]

Description:

This pull request introduces significant updates and enhancements to the project structure and configuration settings, improving functionality and development flexibility:

• Rename Main Project: Updated the main project name to 'es- Journals'.
• SSL Configuration: Implemented a 'certify search' parameter to disable SSL verification as needed.
• Database Path Change: Modified the path for saving databases to better organize resources.
• Development Enhancements: Enhanced the development environment by adding new volume and network configurations.
• Specs and Patch Updates: Updated Makim specs and implemented a path patch to load 'RMEDRXIV'.
• R-Medrxiv Library: Implement instalation of the package with fixes from the github branch.