Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.

Epidemiology analysis package

Stochastic SIR models; adding age-structures and social contact data for the spread of covid-19. Lattice model for identifying and isolating hotspots. This has been further developed into a network(graph) of multiple clusters(lattices) and tracing the infection in such a population.

MetaWards disease metapopulation analysis and modelling software. Professional geographical SIR model with a flexible plugin architecture to support complex scenario modelling

Info/Data (global/italy) about COVID-19. PR welcome for other countries.

🌏🌎🌍 Liberate Google Takeout location data for epidemiological research and local contact tracing https://epi-collect.org

Game theoretical modelling of COVID-19 vaccine adoption

Data analysis for colorectal cancer projects, mainly using metabolomics data.

Curso Intermediário de R para análise de situação de saúde

Code for paper by Corbett, Schongalla, and Moen, about relationships between firearm ownership rates, mental health provider density, and firearm fatality rates.

Genomic Epidemiology of SARS-CoV-2 in Pakistan

Network data analysis using networkx, and gephi for visualisations.

Data analysis and modeling of the COVID-19 propagation dynamics

Data analysis focusing on health problems

An epidemic stimulator, developed and built by brute force to learn more on biological systems.

Inverse probability weighting for non-binary exposures. Simple example in Excel and SAS.

A SEIRS-NIMFA compartmental epidemiological model implementation adapted for the analysis of IoT network malware propagation

Scripts for analysis of metabolomics data relating to nutrition, health and disease in the EPIC study.

Fitting GPs to count data for non-linear regression of epi-curves