Code

AD support#27

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Merged

dochvam merged 43 commits intomasternimble-dev/nimbleEcology:masterfrom AD-rc0nimble-dev/nimbleEcology:AD-rc0Copy head branch name to clipboardJun 25, 2024

+11,235-1,467

Commits

Commits on Jun 8, 2020

• enableDerivs flags for AD

  dochvam

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  5adf10c

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Commits on Jun 12, 2020

• change variables to integers for AD

  dochvam

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Commits on Jun 17, 2020

• Update dDynOcc_sss and dHMM to use new AD features to work.

  perrydv

  committed
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• Merge branch 'AD_0.3' of https://github.com/nimble-dev/nimbleEcology into AD_0.3

  perrydv

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  ffcc5fc

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• update dDynOcc to allow AD; build Travis from ADoak

  dochvam

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  a195c99

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• update *HMM* to allow AD

  dochvam

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  342fc4f

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• adding AD changes to HMM, DHMM

  dochvam

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• draft updates to dHMMo

  perrydv

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  20593df

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• DHMM and HMM AD fix line

  dochvam

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Commits on Jun 19, 2020

• Add AD tests for each dist function (other than Nmix)

  dochvam

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  71f4f8e

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• see if I can get Travis to use ADoak for package building

  dochvam

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Commits on May 23, 2022

• update buildDerivs syntax

  perrydv

  committed
  3cfc98e

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Commits on Jun 3, 2022

• merge changes from main branch

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  5edae30

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• add up-to-date AD testing file

  

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  d308b34

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• work on implementing AD tests

  dochvam

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Commits on Jun 7, 2022

• implement AD tests for at least one of each dist

  dochvam

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Commits on Jun 13, 2022

• build out AD test suite

  dochvam

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Commits on Jun 22, 2022

• see if test-AD will run on Github

  dochvam

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  742248a

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• ask Github to install NIMBLE from AD branch

  dochvam

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  b062e6b

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• add test_utils to nE inst

  dochvam

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  1a5f4c8

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• use test_that in test-AD; add numDerivs to depends

  dochvam

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  bba7385

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• ask for tests on AD-rc0 branch

  dochvam

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  4ef93fd

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• remove pipe from AD_test_utils

  dochvam

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• add pracma to depends

  dochvam

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Commits on Jun 23, 2022

• adjust dhmm tol

  dochvam

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  70b2be6

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• tweak ad tols further

  dochvam

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  6a177e3

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• check all tols

  dochvam

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  699db08

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• install nimble from AD branch on Windows

  dochvam

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  6bee0fd

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• use remotes instead of devtools

  dochvam

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  a738004

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• try putting pracma and numDerivs as installs for testing, not depends

  dochvam

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  4febeac

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• check that N-mixture errors

  dochvam

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Commits on Jun 22, 2024

• AD support. roxygen. refactored dNmixture.

  perrydv

  committed
  41c985e

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• update YAML so tests run

  dochvam

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  0dba4d0

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• switch to supported version of ubuntu for github action

  dochvam

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Commits on Jun 23, 2024

• updates to BetaBinom, yaml, tests, documentation

  perrydv

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  f8efafc

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• update check.yaml

  perrydv

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  31cef5d

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• fix dNmixture_BBP_s

  perrydv

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  e58ce4e

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• tweak dDHMM AD test tolderance

  perrydv

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  ec6be9e

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• more fixed tests

  perrydv

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Commits on Jun 24, 2024

• Update check_windows.yaml

  perrydv

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  1b7fe74

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• try fiddling with yaml Linux content

  perrydv

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  21d9bab

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• Update DESCRIPTION

  perrydv

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  04fa46b

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• edits to Nmix description, pkg description

  dochvam

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